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Nuclear Localization Signal Receptor Importin
Harley M. S. Smith1,a and
Natasha V. Raikhela
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ABSTRACT |
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Importin
is the nuclear localization signal (NLS) receptor that is involved in the nuclear import of proteins containing basic NLSs. Using importin
as a tool, we were interested in determining whether the cytoskeleton could function in the transport of NLS-containing proteins from the cytoplasm to the nucleus. Double-labeling immunofluorescence studies showed that most of the cytoplasmic importin
coaligned with microtubules and microfilaments in tobacco protoplasts. Treatment of tobacco protoplasts with microtubule- or microfilament-depolymerizing agents disrupted the strands of importin
in the cytoplasm, whereas a microtubule-stabilizing agent had no effect. Biochemical analysis showed that importin
associated with microtubules and microfilaments in vitro in an NLS-dependent manner. The interaction of importin
with the cytoskeleton could be an essential element of protein transport from the cytoplasm to the nucleus in vivo.
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INTRODUCTION |
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Macromolecular translocation into and out of the nucleus occurs through the nuclear pore complex (NPC), which is embedded in the nuclear envelope. Import and export of most proteins and ribonucleoproteins through the NPC are receptor-mediated processes facilitated by the importin ßlike proteins, in conjunction with a small GTPase, namely, Ran/TC4 (![]()
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The importin
/ß heterodimer mediates the nuclear import of a subset of nuclear proteins that contain the classic nuclear localization signals (NLSs; ![]()
![]()
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subunit of the heterodimer specifically binds to basic NLSs in the cytoplasm, whereas the ß subunit interacts with the NPC during the import process (![]()
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In plants, an importin
homolog (At-IMP
) identified in Arabidopsis specifically associates with three types of NLS that function in plant cells (![]()
![]()
subunit is a unique high-affinity NLS receptor that can facilitate NLS-mediated protein import in the absence of a ß subunit in vertebrate import systems, indicating that plants may possess an additional NLS import pathway exclusively mediated by the
subunit alone (S. Hubner, H.M.S. Smith, N.V. Raikhel, and D.A. Jans, unpublished data).
Although import and export receptors have been identified, the transport mechanism that targets these import complexes from the cytoplasm to the NPC is poorly understood. Therefore, to study how importin
is targeted to the NPC and to identify cellular factors involved in this process, we were interested in analyzing whether importin
interacts with the cytoskeleton.
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RESULTS |
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Importin
Colocalizes with Microtubules in the Cytoplasm
Previously, we showed that importin
is found in the cytoplasm and nucleus and that it is associated with the nuclear rim in fixed tobacco protoplasts (![]()
is excluded from the nucleolus. The size of the nucleolus differs from cell to cell; as a consequence, the amount of importin
found in the nucleus is variable.
Because the localization pattern of importin
in the cytoplasm of tobacco protoplasts resembles the immunostaining pattern of cytoskeletal proteins (![]()
could interact with the cytoskeleton. Localization of importin
was examined to determine whether importin
colocalized with the cytoskeleton in fixed tobacco protoplasts.
Double immunofluorescence experiments using monospecific antibodies generated against importin
and tubulin were visualized by confocal laser scanning microscopy (CLSM). Figure 1 shows tubulin staining visualized in green and importin
staining visualized in red; overlay images were used to show coalignment. Most of the microtubules extending from the nuclear envelope coaligned with cytoplasmic strands of importin
(Figure 1A). In addition, the localization pattern of importin
is also distinct from soluble and membrane proteins (data not shown).
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Treatment of protoplasts with 10 µM oryzalin, a plant-specific microtubule depolymerizing agent, efficiently depolymerized the microtubules (Figure 1B, green). This treatment also abolished the cytoplasmic strands of importin
(Figure 1B, red). Similar results were obtained when protoplasts were treated with propyzamide, another plant microtubule depolymerizing agent (data not shown). When treated protoplasts were washed to remove the oryzalin, both microtubules and cytoplasmic strands of importin
reappeared and colocalized in the cytoplasm (Figure 2A). When protoplasts were incubated on ice, most of the cold-adapted microtubules found in the cytoplasm (![]()
(Figure 2B). Treatment of protoplasts with 10 µM taxol stabilized the microtubules and did not affect the colocalization of importin
and microtubules in the cytoplasm (Figure 3). These results suggest that the cytoplasmic strands of importin
associate with the microtubules.
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Importin
Colocalizes with Microfilaments in the Cytoplasm
Double immunofluorescence experiments with monospecific anti-actin antibodies and phalloidin were used to determine whether importin
colocalized with microfilaments by using CLSM (Figure 4). Immunostaining of fixed tobacco protoplasts showed that the cytoplasmic strands of importin
also coaligned with microfilaments (Figure 4A). When cells were treated with 50 µg/mL cytochalasin B, not only were the microfilaments depolymerized but some of the cellular actin accumulated inside the nucleus (Figure 4B, green image), which is consistent with recently published observations in plant cells (![]()
to accumulate in the nucleus (Figure 4B, red image). When cells were washed to remove cytochalasin B, microfilaments and importin
cytoplasmic strands were restored in the cytoplasm (data not shown). Protoplasts treated with cytochalasin D also caused importin
to accumulate in the nucleus (data not shown). These results suggest that importin
may be retained in the cytoplasm by association with microfilaments.
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Importin
Associates with Microtubules and Microfilaments
One of the intriguing features of the armadillo family of proteins is their ability to interact with the cytoskeleton. Some family members, such as spKAP115, APC, Pf16, and smgGDS, interact with microtubules, whereas Vac8 and the armadillo/catenin proteins interact with microfilaments (![]()
![]()
![]()
![]()
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contains eight armadillo repeat motifs (![]()
was prepared, centrifuged at high speed to remove any insoluble material, and used to determine whether importin
could interact with microtubules and microfilaments in vitro.
Microtubules were polymerized in the presence of taxol and then mixed with the tobacco protoplast extract in the absence of NLS peptides or in the presence of a functional NLS peptide, Opaque2 wild type (O2WT), or a mutated form of this NLS peptide, Opaque2 mutant (O2MUT) (![]()
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by using immunoblot analysis.
When the tobacco protoplast extract was incubated with microtubules in the presence of O2WT, we detected an association of importin
with these structures (Figure 5, lane 2). In the absence of a functional NLS or in the presence of O2MUT peptides, this association was substantially reduced (Figure 5, lanes 1 and 3, respectively). Control experiments prepared under the same conditions without added microtubules showed that importin
does not pellet in the absence or presence of functional or mutated NLS peptides (Figure 5, lanes 4 to 6, respectively). These results indicate that importin
associates with microtubules in an NLS-dependent manner in vitro.
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We next analyzed whether importin
associated with actin microfilaments in vitro. Actin microfilaments were polymerized and mixed with the tobacco protoplast extract described above, in the absence or presence of O2WT or O2MUT peptides. After incubation, the samples were loaded on a 10% glycerol cushion and centrifuged to pellet actin microfilaments. Actin pellets were resuspended in high-salt buffer to solubilize the protein complexes, separated by SDS-PAGE, and analyzed by immunoblotting to detect association of importin
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Importin
pelleted with the microfilaments in the presence of O2WT peptides (Figure 6, lane 2); however, in the absence or presence of O2MUT peptides, we detected little or no association (Figure 6, lanes 1 and 3, respectively). Control experiments performed under the same conditions showed that importin
did not pellet when microfilaments were omitted from the association assay (Figure 6, lanes 4 to 6). These results indicate that importin
associates with microfilaments in an NLS-dependent manner in vitro.
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DISCUSSION |
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Intracellular transport of organelles (![]()
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In immunofluorescence studies in protoplasts, we found that the cytoplasmic localization of importin
was distinct from that of immunostained soluble and membrane proteins. The cytoplasmic strands of importin
had a distribution similar to that of microtubules and microfilaments in the cytoplasm of fixed tobacco protoplasts. However, the colocalization of importin
with the cytoskeleton was not in a 1:1 ratio in the cytoplasm, demonstrating that a fraction of importin
's localization is independent of the cytoskeleton. The portion of importin
that did not coalign with the cytoskeleton may represent a soluble form of the NLS receptor.
Other proteins, such as the tobacco mosaic virus movement protein (![]()
![]()
(reviewed in ![]()
![]()
![]()
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As a means to characterize the colocalization of importin
with the cytoskeleton, we treated tobacco protoplasts with oryzalin and cytochalasin B to depolymerize the microtubules and microfilaments, respectively. Treating protoplasts with oryzalin disrupted the cytoplasmic strands of importin
, suggesting that importin
may interact with microtubules in vivo. Like importin
, the tobacco mosaic virus movement protein that colocalizes with microtubules and microfilaments also becomes diffuse in the cytoplasm when the microtubules in tobacco protoplasts are depolymerized (![]()
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with the microfilaments in vivo, which explains why all of the importin
becomes dispersed throughout the cytoplasm in these experiments.
Treatment of tobacco protoplasts with cytochalasin B caused most of the cellular importin
to accumulate inside the nucleus. Similar results were obtained when protoplasts were treated with cytochalasin D. These observations suggest that microfilaments could be involved in retaining importin
in the cytoplasm. In addition, some of the cellular actin also accumulated inside the nucleus when the microfilaments were depolymerized. Treatments of maize root tips with cytochalasin D caused the intranuclear accumulation of short actin filament/aggregate-like structures and the actin depolymerization factor ZmADF3 (![]()
's subcellular location, our results suggest that microtubules and microfilaments could play different roles in NLS protein transport.
In vitro pelleting studies suggested that importin
associates with microtubules and microfilaments in an NLS-dependent manner. This association could be essential for the transport of NLS-containing proteins in the cytoplasm of the cell. Because a system to study cytoskeleton transport in vitro does not exist in plants, it is not possible to determine whether importin
moves along these structures during transport before import.
NLS-dependent association of importin
with the cytoskeleton could also be important for anchoring the NLS receptor in the cytoplasm. Gene expression can be controlled by regulating the nuclear import of transcription factors and regulatory proteins (![]()
B class of transcription factors, could be synthesized and tethered to the cytoskeleton (![]()
could be attached to the cytoskeleton through the interaction of the nuclear regulatory proteins anchored to the cytoskeleton. Thus, when the appropriate environmental stimulus is given to the cells, importin
and the regulatory proteins could be released from the anchor mechanism for nuclear import. In plants, nuclear import of regulatory proteins, such as CONSTITUTIVE PHOTOMORPHOGENIC1, phytochrome B, and the transcription factor G-box binding factor, are mediated by light (![]()
![]()
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could be an essential factor in regulating the light-dependent import of these proteins.
We propose that the microtubules are involved in the transport of NLS-containing proteins from the cytoplasm to the NPC. Interestingly, it has been shown that retrograde transport of fluorescently labeled NLS-containing proteins toward the nucleus in neuron cells is microtubule dependent (![]()
associated with microtubules in the presence of NLSs suggests that targeting and transport of importin
to the NPC require NLS-containing cargo. Furthermore, transport must be facilitated by a microtubule motor protein because importin
is not homologous to microtubule motor proteins. Also, importin
accumulated inside the nucleus when the microfilaments were depolymerized, thus indicating that these structures are involved in retaining this receptor in the cytoplasm. In yeast, importin
associates with an isoform of actin, Act2 (![]()
in the cytoplasm.
Interestingly, many mRNAs found in a subset of cellular polysomes anchored on microfilaments encode nuclear proteins, indicating that this interaction is necessary for targeting the newly synthesized proteins to the nucleus (![]()
![]()
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associates with microfilaments at sites at which nuclear proteins are synthesized, so that it can be immediately assembled with these proteins. After assembly, these import complexes can be loaded onto microtubule tracks for NLS protein transport to the nucleus.
In summary, using various approaches, we found that importin
associates with the cytoskeleton. These studies are significant because they provide a link between the cytoskeleton and an import factor, importin
, suggesting that these cellular arrays are essential structures involved in the intracellular transport of a nuclear shuttling NLS receptor in the cytoplasm. In addition, the association of importin
cargo complexes with the cytoskeleton could be a highly regulated process, adding another level of gene regulation in eukaryotes. Taken together, the results of this study support the idea that the cytoskeleton is a dynamic structure involved in many intracellular transport pathways as well as in maintaining the shape and structure of the cell.
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METHODS |
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All chemicals were obtained from Sigma, unless otherwise noted. Nuclear localization signal (NLS) peptides were synthesized at the Peptide Synthesis Facility (Yale University, New Haven, CT). NLS peptides had the following sequences: functional Opaque2 wild-type NLS (O2WT), MPTEERVRKRKESNRESARRSRYRKAAHLKC; and mutant Opaque2 NLS (O2MUT), MPTEERVRTNKESNRESARRS-NYRKAAHKLC. Antibodies to Arabidopsis thaliana importin
(At-IMP
) were purified by At-IMP
affinity chromatography, as described by ![]()
and goat anti-rabbit CY3conjugated antibodies were purchased from Jackson ImmunoResearch Laboratories, Inc. (West Grove, PA). Nucleotides were purchased from Boehringer Mannheim. Cytochalasins B and D were obtained from Calbiochem (La Jolla, CA). Oryzalin was purchased from DowElanco (Indianapolis, IN), and propyzamide was purchased from Chem Service (West Chester, PA). Cytoskeleton depolymerizing agent stock solutions were dissolved in DMSO such that the final concentration of DMSO added to the protoplasts did not exceed 1%.
Immunolocalization in Tobacco Protoplasts
Tobacco suspensioncultured cells were maintained and protoplasts were prepared as described by ![]()
were performed as described by ![]()
For colocalization experiments with importin
and tubulin, 150 ng of At-IMP
rabbit antibodies and tubulin monoclonal antibodies were mixed together in AB buffer (PBST and 1% BSA). For colocalization experiments with importin
and actin, 150 ng of At-IMP
rabbit antibodies and BODIPY-conjugated phalloidin (final concentration was 1 µM) were mixed together in 50 µL of AB buffer. To detect actin in proto-plasts treated with cytochalasin B or D, we mixed together 150 ng of At-IMP
rabbit antibodies and actin monoclonal antibodies in AB buffer. The primary antibody solutions were added to separate samples of fixed protoplasts and incubated for 1 hr at 23°C in a moist chamber.
After incubation, the samples were washed in PBST for 30 min at 23°C. The secondary antibodies generated to CY3-labeled goat anti-rabbit and BODIPY-conjugated goat anti-mouse antibodies were diluted 1:50 in AB buffer and applied to the samples; then they were incubated for 1 hr in a moist dark chamber. Samples were washed in PBST for 30 min at 23°C and then mounted with a 50 / 50 mixture of Slow Fade (Molecular Probes Inc.) and Permafluor (Immunon, Pittsburgh, PA). No cross-reactivity was detected in samples incubated with CY3-labeled goat anti-rabbit and the monoclonal tubulin or actin antibodies (data not shown). Similar results were observed when samples were stained with BODIPY-labeled goat anti-mouse and importin
antibodies (data not shown).
For cytoskeleton depolymerization experiments, we treated protoplasts with 10 µM oryzalin or 25 µM propyzamide (data not shown) for 1 hr to disrupt microtubules before fixation. Microfilaments were depolymerized with either 50 µg/mL cytochalasin B or 50 to 100 µM cytochalasin D (data not shown) for 1 hr before fixation. Restoration of microtubules or microfilaments was achieved by washing the treated protoplasts in NT buffer (4.3 g/L Murashige and Skoog salts [Gibco BRL], 1 mg/L thiamine, 0.1 g/L myoinositol, 0.18 g/L KH2PO4, and 30 g/L sucrose, adjusted to pH 5.7) to remove the depolymerizing agents. Protoplasts were incubated for 2 to 3 hr at 23°C before fixation and immunolocalization (data not shown).
Confocal Laser Scanning Microscopy
Confocal laser scanning microscopy (CLSM) was performed with a Zeiss Axioskop (Carl Zeiss, Oberkochen, Germany) slit scanning microscope equipped with the Meridan InSIGHT PLUS imaging system (Genomics Solutions Lansing Division, Okemos, MI). Excitation of the BODIPY and CY3 chromophores was performed with a 488-nm laser by using a 505-nm dichroic mirror and a 515-nm barrier filter. Samples were viewed with a 63x oil immersion objective, and BODIPY and CY3 fluorescence were detected with the 515- to 545-nm and 580- to 600-nm filters, respectively. Images were collected with a cooled DNC 1000 intensified CCD camera (Genomics Solutions Lansing Division) and viewed with the InSIGHT imaging system. For double immunofluorescence studies, we collected fluorescence from BODIPY and CY3 simultaneously and then separated them with the InSIGHT RGB program. There was no fluorescence crossover detected with single-labeled controls (data not shown). Figures were composed with Photoshop 5.0 (Adobe Systems, Mountain View, CA). Optical sections for these studies were 1 µm thick.
Preparation of the Tobacco Protoplast Extract
In cell fractionation studies using differential centrifugation to isolate cytoskeleton fractions (![]()
cofractionated with the 27,000g pellets enriched with tubulin and actin (H.M.S. Smith and N.V. Raikhel, unpublished data). In addition, importin
was also detected in the soluble fraction, indicating that a portion of NLS receptor is soluble in the tobacco protoplasts. A tobacco protoplast extract containing importin
was prepared to examine whether importin
could associate with microtubules and microfilaments in vitro. This extract contained proteins solubilized from the 27,000g pellet mixed with the soluble fraction isolated from tobacco protoplasts.
Briefly, tobacco protoplast extract was prepared by isolating 27,000g pellets and extracting it with cold PM buffer (50 mM Pipes, pH 6.8, 1 mM MgSO4, 1 mM EGTA) plus protease inhibitors containing 0.5 M NaCl and 5 mM ATP/GTP for 20 min. For microtubule association assays, we pelleted the extracts at 100,000 g for 2 hr at 4°C and then dialyzed them in cold PM buffer plus 1 mM DT T to remove the NaCl and nucleotides. The desalted extract was concentrated with the Ultrafree-4 Centrifugal Filter Unit used to concentrate protein samples (Millipore, Bedford, MA) and then mixed 50 / 50 with the 100,000g soluble fraction isolated from lysed protoplasts.
For microfilament association assays, a similar procedure was used to isolate a plant cell extract except for the following: (1) all centrifugation steps were performed at 150,000g, and (2) all fractions were dialyzed against cold actin stabilization buffer (ASB; 5 mM Tris-HCl, pH 8.0, 2 mM MgCl2, and 50 mM KCl) to remove NaCl and nucleotides. The protein concentration of these plant cell extracts was 3 to 5 mg/mL. Aliquots were frozen at -80°C and used in the cytoskeleton pelleting assays.
Microtubule Association Assay
For microtubule association assays, 100 µM bovine brain tubulin (Cytoskeleton, Denver, CO) was polymerized in PM buffer plus protease inhibitors, 100 µM taxol, and 1 mM GTP at 4°C for 30 min, followed by incubation at 23°C for 30 min and transfer to 37°C for 30 min. Polymerized microtubules were visualized by immunofluorescence (data not shown).
To determine whether importin
associates with microtubules, we diluted polymerized tubulin to 10 to 20 µM in 50 to 100 µL of the plant cell extract at 23°C. The functional NLS peptide O2W T or the mutated NLS O2MUT was added to a final concentration of 200 µM to the association assays. After the 30-min incubation period, samples were loaded onto a 40% sucrose in PM buffer containing 10 µM taxol and pelleted at 100,000g for 1 hr at 23°C. Microtubule pellets were resuspended in 0.5 M NaCl in PM buffer plus protease inhibitors for 20 min and then pelleted at 12,000g for 10 min to remove any insoluble material. The association of importin
with the microtubule pellets was detected by immunoblot analysis as described by ![]()
could pellet through the 40% sucrose cushion under the same conditions.
Microfilament Association Assay
The actin binding protein biochemical kit BK001 (Cytoskeleton) was used to determine whether importin
could associate with microfilaments. Briefly, a stock of 1 mg/mL actin was polymerized in the presence of 2 mM MgCl2, 50 mM KCl, and 1 mM ATP at 23°C for 1 hr. The final concentration of F-actin was 23 µM. F-actin was diluted in the tobacco protoplast extract to 15 µM for 30 min at 23°C. The functional NLS peptide O2WT or the mutated NLS peptide O2MUT was added to a final concentration of 200 µM in the microfilament association assays. After incubation, samples were loaded onto 10% glycerol cushions in ASB and pelleted at 150,000g for 1.5 hr at 4°C. F-actin pellets were resuspended in 0.5 M NaCl in ASB plus protease inhibitors for 20 min and then pelleted at 12,000g for 10 min to remove any insoluble material. The association of importin
with the microfilament pellets was detected by immunoblot analysis as described by ![]()
could pellet through the 10% glycerol cushion under the same conditions.
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FOOTNOTES |
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1 Current address: Plant Gene Expression Center, 800 Buchanan St., Albany, CA 94710. ![]()
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ACKNOWLEDGMENTS |
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We are grateful to Kurt Stepnitz for photography, Marlene Cameron for graphics, and Dr. Glenn R. Hicks for valuable discussions and critical reading of the manuscript. We are indebted to Drs. Joanne Whallon and Shirley Owens at the Confocal Laser Scanning Microscopy Facility at Michigan State University for their help with the microscopy work. This work was supported by a grant from the Department of Energy (No. DE-FG02-91ER20021).
Received July 20, 1998; accepted September 9, 1998.
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